Bokeh: An interactive visualization library that targets modern web browsers for presentation
...odern web browsers for presentation. Its goal is to provide elegant, concise construction of versatile graphics, and to extend this capability with high-performance interactivity ove...2122 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
...ads are difficult to assemble and often lead to highly fragmented assemblies. The...wever, so far long reads are characterized by a high error rate, and assembling fr...produced by PacBio sequencing technology, using high-quality Illumina paired-end r...2112 days ago
LRCstats: a tool for evaluating long reads correction methods
...er in length than reads produced by next generation sequencing technologies, such as those produced by Illumina. However, long reads are plagued by high error rates, which can cause...2110 days ago
LoRMA: A tool for correcting sequencing errors in long reads
...d is the most accurate one relying on long reads only for read sets with high coverage. Furthermore, when t...is at least 75×, the throughput of the new method is at least 20% higher. conda install -c atgc-m...2095 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
SeqMonk is a program to enable the visualisation and analysis of mapped sequence data. It was written for use with mapped next generation sequence data but can in theo...2090 days ago
rHAT: a seed-and-extension-based noisy long read alignment tool
rHAT is a seed-and-extension-based noisy long read alignment tool. It is suitable for aligning 3rd generation sequencing reads which are in large read length with relatively high error rate, especially Pacbio's Single Molecule Read-time (SMRT) sequencing reads.2078 days ago
2074 days ago
BASE: a practical de novo assembler for large genomes using long NGS reads
...h by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquel...branches based on read coverage and paired-end information, resulting in high-quality consensus sequences o...2052 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
... is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly it achieves both high sensitivity and high specific...2046 days ago
COSINE: non-seeding method for mapping long noisy sequences
Third generation sequencing (TGS) are highly promising technologies but the long and noisy reads from TGS are difficult to align using existing algorithms. Here, we present COSINE, a conceptually new method designed specifically for aligning long reads contaminated by a high level of errors.2046 days ago