1980 days ago
1978 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) fro...hidden Markov model algorithm and a calling method that classif...e EXCAVATOR on three datasets and compare the results with thre...has been published on Genome Biology (http://genomebiology.com/2013/14/10/R120/abstract)...1976 days ago
1969 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools supporting molecule manipulation and processing, including SMILES and SDfi...ule fragmentation, calculation of various molecular properties needed in QSAR, molecular modelling and dru...1960 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biol...and Apple operating systems. These works were publis...Visualization System." Genome Biology 2003 4(3):R22 [Genome Biology] [PDF] [PubMed] and supported by the National In...1960 days ago
SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
FASTA and FASTQ are basic and ubiquitous formats for storing nucleotide and protein sequences. Co...ing, deduplication, splitting, shuffling, and samp...are only available for certain operating systems....installation process of required packages and run...1960 days ago
1959 days ago
DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically display r...printing order of clusers, colors, and other gra...ected first to a registration page and we w...;[Download software note from Molecular Ecology Notes 4: 137-138...uct may also find CLUMPP and&nbs...1896 days ago
iRNAD: a computational tool for identifying D modification sites in RNA sequence
iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the classification. http://lin-group.cn/server/iRNAD/1844 days ago