870 days ago
CrossMap: program for genome coordinates conversion between different assemblies
...;hg19 (GRCh37)). It supports commonly used file formats including BAM, CRAM, SAM, Wiggle, BigWig, BED, GFF, GTF, MAF VCF, and ...864 days ago
640 days ago
OrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes
OrthoVenn3 is a powerful tool for comparative genomics analysis, used as a web server for full genome comparisons, annotation, and evolutionary analysis of orthologous clusters across multiple species. It has already been used by thousands of users from over 60 countries.402 days ago
Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes
...a Analysis Pipeline, and Bactopia Tools. Bactopia Analysis Pipeline is the main per-isolate workflow in Bactopia. Built with Nextflow, input FASTQs (local or av...23 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes. Our goal was to make it straightforward to work from a combination of input sour...107 days ago
pipesnake: bioinformatics best-practice analysis pipeline for phylogenomic reconstruction
...'second-generation' sequencing data. The pipeline is built using Nextflow, a workflow tool to run ta...making installation trivial and results highly reproducible. The Nextflow DSL2 implementation o...107 days ago