Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...of foreign DNA sequences an important part of analysis pipelines. Here we use Taxobl...and algal sequences. This or similar types of analysis, in combination with manual c...n of genomic data to public repositories. Our analysis pipeline is open-source and f...2396 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinI...2396 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
...some and FISH/GISH/banding signal measurement and idiogram drawing as well as number of useful functions facilitating the procedure of chromosome analysis," explain the scientists. "T...2392 days ago
Computational Genomics: Applied Comparative Genomics
...the tree of life. The topics will include genome assembly & comparative genomics, variant identification & analysis, gene expression & regulation, personal genome analysis, and cancer genomics. The gra...2390 days ago
Scripts for the analysis of HGT in genome sequence data.
Scripts for the analysis of HGT in genome sequence data2390 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
...f alignment parameters, particularly the gap extension score. As an accurate alignment tool, ACANA is particularly useful in comparative sequence analysis for identifying conserved fun...2383 days ago
Harvest: a suite of core-genome alignment and visualization tools
...microbial genomes, including variant calls, recombination detection, and phylogenetic trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive vis...2381 days ago
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1424 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
...improvement of nanopore sequencing technology. The first step of NanoSim is read characterization, which provides a comprehensive alignment-based analysis and generates a set of read p...2371 days ago