coursera genome assembly tutorial
Solutions to Coursera Genome Sequencing (Bioinformatics II)2368 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs a...2366 days ago
2364 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...ng any additional hardware devices. PLAST stands for Parallel Local Sequence Alignment Search Tool and is was published in BMC Bioinformatics. PLAST is a general purpose...2362 days ago
Bandage: interactive visualization of de novo genome assemblies
Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) is a tool for visualizing assembly graphs with connections. Users can zoom in...2359 days ago
Mugsy: multiple whole genome alignment tool
...re a reference genome. To cite Mugsy, use: Angiuoli SV and Salzberg SL. Mugsy: Fast multiple alignment of closely related whole genomes.Bioinformatics 2011 27(3):334-42355 days ago
TeachEnG: Teaching Engine for Genomics
...pronounced “teaching”), a Teaching Engine for Genomics, provides educational games to help students and researchers understand key bioinformatics concepts. The current version...2350 days ago
1398 days ago
Biological file format tutorial
This section explains some of the commonly used file formats in bioinformatics. The information provided here is basic and designed to help users to distinguish the difference between dif...2346 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
...ils see: Nikolay Vyahhi, Son K. Pham, Pavel Pevzner. From de Bruijn Graphs to Rectangle Graphs for Genome Assembly, Lecture Notes in Bioinformatics 7534 (2012), pp. 249-261...2335 days ago