2350 days ago
Seal: SEquence ALignment evaluation suite
Seal is a comprehensive sequencing simulation and alignment tool eva...te alignment algorithms, including: Reading a pre-existing reference g...repeat variability rate). Simulating reads from random locations in the...ent tool and calculating the number of reads...2342 days ago
ECTOOLS: Long Read Correction and other Correction tools
Long Read Correction and other Correction tools This package is a loose collection of scripts. To run...rt, the correction algorithm takes as input the unitigs from a short read assembly and uses them to correct long read...2340 days ago
LRCstats: Long Read Correction Statistics
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generatio...d by Pacific Biosciences. The reads produced by third generation...ed by Illumina. However, long reads are plagued by high error ra...thers, and developers of long read...2340 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus outperforms PacBioToCA/LSC in terms of accuracy and c...dat HiSeq/MiSeq (100-500bp) Unitigs 454, ... proovread...2340 days ago
Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order t...a file to a more streamlined coordinates file with an index that enables Dot to read...2331 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper:&nb...2307 days ago
REGEN: Ancestral Genome Reconstruction for Bacteria
REGEN infers evolutionary events, including gene creation and deletion and replicon...method. Gene content reconstruction is based on the concept of neighboring gene pairs. REGEN was designed to be use...2280 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS, an application that utilizes the barcoding information contained in linked reads to further organize draft genomes into highly contiguous assembli...tility in harnessing the barcoding information contained in linked read...2280 days ago
2236 days ago