Results for "Completeness"
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Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/3047 days ago
- ...reads of length 250 or longer — produced on MiSeq or HiSeq 2500 — and from a single PCR-free library. These data enable a level of completeness and continuity that was not p...
2976 days ago
- ...ntitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily infor...rmed expectations of gene content from hundreds of species, to gauge completeness of rapidly accumulating genom...
2954 days ago
- ...sis pipeline, hence enabling the generation of standard reports. GAEMR’s analysis philosophy is centered on contiguity, correctness, and completeness -- how many pieces in an asse...
2919 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1263 days ago
- ...nd the reads coverage information or sequencing reads. For users' convenience MaxBin will report genome-related statistics, including estimated completeness, GC content and genome size i...
2654 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
...plots, such that results from different methods can be compared side-by-side. gbtools reports summary statistics of bins including marker gene completeness, and allows the user to add o...2634 days ago
Genome assembly stats plotting
...Length of longest scaffold/contig Scaffold/contig N50 and N90Assembly base composition, in particular percentage GC and percentage Ns CEGMA completeness Scaffold/contig length/count...2295 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder, a fast and accurate tool using paired-end RNA-sequencing reads to scaffold genomes. This tool aims to improve the completeness of both protein-coding and non-coding gen...2191 days ago
- ...set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using co...
2211 days ago
