Bioinformatics tools for telomere to telomere assembly !
...Analysis) – separates complex mixtures of amplicon targets from genomic samples to cluster and generate high-quality consensus sequences from HiFi reads (Zev Kronenberg @z...1130 days ago
1638 days ago
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can assemble a huma...e, one of the most complex genomes sequenced so far. Hifiasm can produce primary/altern...1366 days ago
1067 days ago
Bash script to simulate a genome !
# Reference https://github.com/chhylp123/hifiasm/issues/33 # Use Drosophila mel...make 30x haploid coverage for PacBio reads for Hifi reads # error rate from 1 -...gth=9000 midlength=10000 maxlength=12000 \ out=hifi.fastq.gz > random_reads_pacbi...1056 days ago
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can assemble a human genome in several hours and works with the California redwood genome, one of the most complex genomes sequenced so far. Hifiasm can produce primary/alternate assemblies of quality competitive wit...Tags: Hifiasm, haplotype-resolved, assembler, accurate, Hifi, reads
1366 days ago
Tags: Understanding, HiFi, Reads, NGS
911 days ago