Results for "Magic"
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Magic-BLAST is a tool for mapping large next-generation R...red as a separate hit and read-pairing is ignored. Magic-BLAST incorporates within the...BI BLAST code framework ideas developed in the NCBI Magic pipeline, in particular hit e...2364 days ago
mojolicious: a next generation web framework for the Perl programming language.
...able web services. JSON and HTML/XML parser with CSS selector support. Very clean, portable and object-oriented pure-Perl API with no hidden magic and no requirements besides P...2347 days ago
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Top-level pages
Perl one-liner for bioinformatician !!!
...-for.html http://genomespot.blogspot.com/2013/08/a-selection-of-useful-bash-one-liners.html http://biowize.wordpress.com/2012/06/15/command-line-magic-for-your-gene-annotations/ h...3671 days ago
Awesome perl frameworks, libraries and software - PART 1
...enerator written in perl. lestrrat/p5-ZMQ - libzmq Perl binding jpoliv/wakeonlan - Perl script for waking up computers via Wake-On-LAN magic packets dod38fr/config-model...2532 days ago
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Wire posts
Bio-Scripts
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 --...
1485 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...ir taxdump; cd taxdump; wget ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz; tar xzfp taxdump.tar.gz`; parseResult ($result); #do your magic here sub parseResult { sy...1203 days ago
Groups
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for...3946 days ago
Tags
- Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of RNA-seq, locating the candidate introns and adding up ...
Tags: NCBI, Magic, BLAST, Documentation
1549 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
The algorithm presented herein, Mining Algorithm for GenetIc Controllers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of TFs and cofactors in gene bodies and flanking regions in gene lists without an a priori binary classification of genes as...Tags: MAGIC, tool, predicting, transcription, factors, cofactors, driving, gene, sets, ENCODE, data
1298 days ago
