Results for "Orthology"
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Orthology relations can be used to transfer a...otein) to another. Hence, detecting orthology relations has become an impor..., can cause erroneous assignment of orthology relations. In closely-related...for accurately predicting pairwise orthology relations based on gene neigh...2418 days ago
ASAR: Advanced metagenomic Sequence Analysis in R
...ion, aggregation and visualization of metagenomic data is presented. Functional analysis with a SEED hierarchy and pathway diagram based on KEGG orthology based upon MG-RAST annotation...2181 days ago
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BioRuby :Ruby packages for biologist
.... Classes for Multiple alignment (Bio::Alignment), Gene Ontology(Bio::GO), PDB (Bio::PDB), FANTOM database(Bio::FANTOM), GFF (Bio::GFF) and KEGGOrthology (Bio::KEGG::KO). They also a...4001 days ago
Top-level pages
Tools for bacterial whole genome annotation
...BlastKOLA: Assigns K numbers to the user's sequence data by BLAST searches, respectively, against a nonredundant set of KEGG GENES. KOALA (KEGG Orthology And Links Annotation) is KEGG...2386 days ago
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- ...ltiple sequence alignments. Moreover, phylomeDB provides genome-wide orthology and paralogy predictions whic...ublic download section with the complete set of trees, alignments and orthology predictions. More at...
3973 days ago
Opportunity posts
- ...ference number: SU FV-2293-13. Deadline for application: September 10, 2013. Project title: Functional Inference from Domain Architecture and Orthology Requirements To be acce...
3951 days ago
Visiting Scientist - Computational Genomics (two positions)
...ogy and metabolic pathway analysis Epigenome analysis, small RNA identification Gene family analysis, sequence level protein analysis, orthology/paralogy and molecular modell...3643 days ago
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Mercator: Multiple Whole-Genome Orthology Map Construction
Whole-genome homology maps attempt to identify the evolutionary relationships between and within multiple genomes. The term "syntenic" is often used to describe regions of multiple genomes that are believed to have evolved from the same region in an ancestral genome. However, it has been pointed ...Tags: Mercator, Multiple, Whole-Genome, Orthology, Map, Construction, orthologous, homologous, paralogous, Synteny, ancetral
1501 days ago
UPhO: Scripts for homology and orthology assessment from genomic sequences.
UPhO finds orthologs with and without inparalogs from input gene family trees. Refer to the Documentation.pdf for more detailed explanations on its usage, installation and dependencies. Type UPhO.py -h for help. The only input requierement for UPhO is a tree (or trees) in Newick format in which ...Tags: UPhO, Scripts, homology, orthology, assessment, genomic, sequences
1992 days ago
Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Orthology Detection Combining Clustering and Synteny for Very Large Datasets http://journals.plos.org/plosone/article?id=10.1371/journal.pone.01050153053 days ago
