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How to install Perl modules manually, using CPAN command, and other quick ways
...install bioperl If it is installed then flash the following message: Reading package lists... DoneBuilding dependency tree Reading state information... Donebiop...3992 days ago
Five unique traits of effective computational biologist
...d get excited about your discoveries. You have not only to discover but also defend your finding with scientific words. Thanks to all of you for reading.3992 days ago
Method in Comparative genomics !!
...ation of protein-coding genes based on their patterns of nucleotide conservation across related species. We observed the pressure to conserve the reading frame of functional proteins...2776 days ago
Many-Core Engine (MCE) for Perl example
...; :manager, :worker, and :getter. REQUIREMENTS Perl 5.8.0 or later. PDL::IO::Storable is required in scripts running PDL. SOURCE AND FURTHER READING The source, cookbook, and ex...2693 days ago
R Graphical Cookbook by Winston Chang
...en several figures In some cases, it may be necessary to install an add-on package from CRAN to get the code to run. More books at http://www.e-reading.club/bookreader.php/137370/C4...2196 days ago
A guide for complete R beginners :- Getting data into R
...is separated only by tabs and has a header mydata Really useful if you have spaces in the contents of some columns, so R does not mess up reading the columns . However if the...3400 days ago
Genome Assembly Tools and Software - PART2 !!
...next-generation sequencing reads and producing genomic scaffolds, open-reading frames and taxonomic or funct...f trace date with nucleotide data is possible. It also allows for proofreading and base editing....2728 days ago
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Parse a genbank file using regular expressions
#! /usr/local/bin/perl -w $genbank = "genbank_file.txt"; open (GENBANK, $genbank) || die "cannot open $gb_report for reading: $!"; # Flag for multiline translation; 1 means t...2959 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
...install dos2unix [sudo] password for bioqueen: Reading package lists... Done Building dependency tree Reading state information... Done Th...Selecting previously unselected package dos2unix. (Reading database ... 177704 files and...1219 days ago
Nucleus: Python and C++ code for reading and writing genomics data.
Nucleus is a library of Python and C++ code designed to make it easy to read, write and analyze data in common genomics file formats like SAM and VCF. In addition, Nucleus enables painless integration with the TensorFlow machine learning framework, as anywhere a genomics file is consumed or produ...Tags: Nucleus, Python, C++, code, reading, writing, genomics
1596 days ago
Comment on "Calculate the significance of the difference between two trends"
Useful reading material https://statsandr.com/blog/anova-in-r/460 days ago
Comment on "Installing Bio::SCF perl module"
jit@jit-HP-Pro-3335-MT:~/Downloads$ sudo cpan -T install Bio::SCP[sudo] password for jit: Loading internal null logger. Install Log::Log4perl for logging messagesReading '/home/jit/.cpan/Metadata' Database was generated on Fri, 13 Mar 2020 03:55:17 GMTinstall is up to date (0.01).1484 days ago