Results for "app"
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GeneValidator - Identify problems with predicted genes
...d researchers who need accurate gene predictions. If you would like to use GeneValidator on a few sequences, see our online GeneValidator Web App -http://genevalidator.sb...2837 days ago
- ..."File" takes a correctly formatted.csv file. "List" takes up to 6 different lists that contain unique elements, similar to that used in the web applications BioVenn (Hulsen...
2606 days ago
Perlbrew: admin-free perl installation management tool.
...perlbrew.pl | bash # FreeBSD \fetch -o- https://install.perlbrew.pl | sh If you prefer to install with cpan, there are two steps: sudo cpan App::perlbrew perlbrew init I...2517 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...implementations is limited. CrocoBLAST combines the accuracy and general applicability of BLAST with compu...tational resources are available. https://webchem.ncbr.muni.cz/Platform/App/CrocoBLAST2504 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
...tools for formatting data files to be read directly over HTTP. Serve huge datasets from a single low-cost cloud instance. Can run as a stand-alone app on OSX and Windows using the...2164 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
...or further details about the original technique see the UpSet website. You can also check out the UpSetR shiny app. Here is the source code for the shiny wrapper. A Python package&nbs...1951 days ago
dotPlotly: Generate an interactive dot plot from mummer or minimap alignments
Create an interactive dot plot from mummer output OR PAF format R script that makes a plotly interactive and/or static (png/pdf) dot plot. Shiny app available for testing1927 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
...ediate Early Gene expression levels. In summary, MAGIC is a standalone application that produces meaning...cofactors in transcriptomic experiments. More at https://uwmadison.app.box.com/s/8j90e5h2rjrsz3bacax...1283 days ago
Collection of Graph Visualization tools !
Standard approaches to genome inference and analysis relate sequences to a single linear r...y. Variation and sequence are separated. https://fungidb.org/fungidb/app/downloads/Current_Release/Gul...494 days ago
JBrowse 2: a modular genome browser with views of synteny and structural variation
igvjs - a create-react-app with igv package from npm installed. the igv.js is instrumented to output...jb1 - stock instance of jbrowse 1 v1.16.11 jb2 embedded - a create-react-app with @jbrowse/react-linear-ge...403 days ago
