Results for "indel"
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...nome and the evidence in the reads. It then attempts to make improvements to the input genome, including: Single base differences Small indels Larger indel or block substitution events...3032 days ago
- ...t is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate...reads with uniform substitution sequencing errors. It does not generate INDEL sequencing errors, but this c...
2896 days ago
- ...ng/writing/editing/indexing/viewing SAM/BAM/CRAM formatBCFtoolsReading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variantsHTSlibA C li...
2631 days ago
Seal: SEquence ALignment evaluation suite
...bility rate). Simulating reads from random locations in the genome based on input parameters of read length, coverage, sequencing error rate, and indel rate. Applying alignment too...2337 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
...mbled for every 25kb window (with some small overlap) for every region in the genome. The default is to use only clipped, discordant, unmapped and indel reads, although this can be c...1954 days ago
LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
...ersion 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequenc...nd other sources of errors inherent in sequencing (e.g. mapping or base/indel alignment uncertainty), which...1561 days ago
Best Practices for Variant Calling with the GATK
...te marking with Picard tools Matt Sooknah PDF Video 03/19/15 Mapping and processing RNAseq Ami Levy-Moonshine PDF Video 03/19/15 Indel realignment Mark Fleharty P...1557 days ago
SvABA: Structural variation and indel detection by local assembly
...mbled for every 25kb window (with some small overlap) for every region in the genome. The default is to use only clipped, discordant, unmapped and indel reads, although this can be c...1540 days ago
