Results for "likelihood"
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...ge, polyploidy has received significant attention because of the impact such an event may have on the organism. ChromEvol implements a series of likelihood models for the evolution of c...3439 days ago
- ...each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate the likelihood of chance similarities betwee...
3029 days ago
- Assembly Likelihood Evaluation (ALE) framework that overcomes these limitations, systematically evaluating the accuracy of an assembly in a reference-independent manner using...
2982 days ago
- ...pare the quality of different assemblies. For comparing multiple assemblies of the same data-sets, VALET also reports an overall estimate of the likelihood a particular assembly is corr...
2833 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2764 days ago
- ...aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate the likelihood of chance similarities betwee...
2744 days ago
- ...ly, abundance estimation and differential expression testing Phylogenetics &mdash The small and large phylogeny problem; parsimony, maximum likelihood and Bayesian methods...
2400 days ago
REGEN: Ancestral Genome Reconstruction for Bacteria
...uding gene creation and deletion and replicon fission and fusion. The reconstruction can be performed by either a maximum parsimony or a maximum likelihood method. Gene content reconstr...2303 days ago
MCMCTREE: a phylogenetic program for Bayesian estimation of species divergence times
...analyze an easy example modified from dataset of Inoue et al. (2010). Here we conduct a commonly used time estimation method, "Approximate Likelihood Method", for the datasets inc...2215 days ago
- GMcloser uses likelihood-based classifiers calculated from the alignment statistics between scaffolds, contigs and paired-end reads to correctly assign contigs or long reads to...
2206 days ago
