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RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
...his paper, we describe the RAST tool kit (RASTtk), a modular version of RAST that enables researchers to build custom annotation pipelines. RASTtk offers a choice of software for iden...2971 days ago
- ...ds of samples containing hundreds of millions of sequencing reads. Blast-like analysis can be performed using DIAMOND. Comprehensive. MEGAN6 offers a large range of analysis too...
2882 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...ations can be replaced by a connectivity matrix and a reduced dispersal matrix describing migration only among the connected sub-populations. This offers a substantial gain in computi...2814 days ago
- ...and platforms. GoJS makes constructing JavaScript diagrams of complex nodes, links, and groups easy with customizable templates and layouts. GoJS offers many advanced features for us...
2762 days ago
iTOL: interactive Tree Of Life
...sp;is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, and offers a novel circular tree layout,...2692 days ago
- ...the Perl 6 executable program and other utilities, how to debug Perl 6 programs, and how to hack on Perl 6 source code. The Perl 6 homepage offers a comprehensive list of Perl...
2690 days ago
- ...Each CLG file corresponds with one bacterial genome. If multiple genomes are being considered and compared, multiple CLG files are needed. ChunLab offers >40,000 CLG files of publi...
2661 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using diverse information sources. GRASS offers a mixed-integer programming f...2580 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
...The overview section of the BEDOPS v2.4.26 documentation summarizes the toolkit, functionality and performance enhancements. The reference table offers documentation for all applica...2560 days ago
- ...mon datasets. Advanced features allow limited analyses to be performed as a figure is drawn. Includes an extensive set of regression tests. Offers a prototype web-based GUI (un...
2547 days ago
