Best practices in bioinformatics training for life scientists
...t just to use, and gain familiarity with, bioinformatics tools and resources but also to understand their underlying fundamental theoretical and practical concepts. Find the detail pa...3962 days ago
Following the scientific literature: A personal practical guide for young computational biologists
The goal of this guide is to describe why, when, where and how can you follow the most up-to-date science of interest and what pa...3952 days ago
1147 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
...or knowledge, but these do not scale to arbitrarily large genomes and arbitrarily large phylogenetic distances. Results: We present Cnidaria, a practical tool for clustering genomic a...2924 days ago
Statistical for biological research
...is completed, when it may be too late. This collection highlights important statistical issues that biologists should be aware of and provides practical advice to help them improve t...2784 days ago
2631 days ago
AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designed to be fast, memory efficient, and practical for sequence alignments of large genomic regions up to megabases long. We...2582 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...d oriented using paired reads separated by ∼280 bp or ∼3.2 kbp, and many gaps between contigs can be closed using paired-end placements. Practical issues with the dataset are d...2415 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
...t can utilize multiple complete genomes of related organisms as references to more accurately order and orient the contigs of a draft genome. In practical usage, our Multi-CAR does not...2296 days ago
STELLAR: fast and exact local alignments
STELLAR is very practical and fast on very long sequences which makes it a suitable new tool for finding local alignments between genomic sequences under the edit distance model. Binaries are freely available for Linux, Windows, and Mac OS X at http://www.seqan.de/projects/stellar.2120 days ago