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Comment on "Short-read assembly using Spades !"
...for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Nanopore...tall SPAdes: SPAdes can be downloaded from the official websi...e files for each read. Run SPAdes: To run SPAdes, open t...gs using a text editor or a genome browser. SPAdes also pr...559 days ago
Comment on "Tools for Sequence translation !"
Sequence translation is the process of converting a DNA or RNA sequence into its corresponding protein sequence. This is an importan...eral tools available for sequence translation, including:.... SeqKit: This is a command-line tool that can perform s...559 days ago
Comment on "Tools for Differential expression analysis"
Differential expression analysis is a widely used technique in genomics and transcrip...forming differential expression analysis, including: DES...t is commonly used for differential expression analysis of RN...ased on the relative expression values of the genes and provi...559 days ago
Comment on "Tools for RNA classification"
...e are several tools available for RNA classification, each with its own strengths...nd limitations. Here are some commonly used tools: Infernal:.... It is particularly useful for identifying non-coding RNA (ncRNA)...ol that uses a support vector machine (SVM) algorithm to classify...559 days ago
Comment on "Basic command-line to run BLAST"
BLAST compares a query sequence to a database of known sequences and identifies the m...ar matches. This is useful for identifying the function of a newl...or for understanding the evolutionary relationships between diff...It then expands the matches to identify longer regions of similar...559 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
To install BioPerl on a macOS system, you can follow these steps: Open the Terminal app on your macO...Install Homebrew if you haven't already installed it by ent..." Update Homebrew by entering the following command:...Verify the installation by running a BioPerl script o...561 days ago
Comment on "Perl Module Installation"
To install BioPerl on a macOS system, you can follow these steps: Open the Terminal app on your macOS...Install Homebrew if you haven't already installed it by ent...ent.com/Homebrew/install/HEAD/install.sh)" Update Home...BioPerl by entering the following command: cpanm BioPerl...561 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Genome synteny analysis is the comparison of the genomic structure and gene content of two or more relat...y relationship or biological interest. Obtain the genome seq...y the orthologous genes between the genomes using tools such...Validate the results of the synteny analysis by comparing the...562 days ago
Comment on "Basic command-line to run BLAST"
Following steps need to followed while doing any homology search. ...searching a database of sequences to find those that match a...he database: BLAST searches can be performed against many dif...ed the query sequence, including the alignment score, identit...562 days ago
Comment on "Elgg Installation steps !"
If you need to uninstall all MySQL packages sudo apt-get remove --purge mysql* sudo apt-get autoremove sudo apt-get autoclean564 days ago
