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Five unique traits of effective computational biologist
...ks of their profession are not only good programmer but also expert...l stuff. Moreover, In order to be a good and effective biological pr...t’s absolutely necessary. The good biological programmers lear...erflow or the BioStars forums never got anything resembling an answe...3968 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...mputer or server is not connected to the Internet. Download Perl module: Go to CPAN Search website and se...and make test.# perl Makefile.PLChecking if your kit is complete...Looks goodWriting Makefile for XML::Pa...3968 days ago
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Online Courses for biology beginners
Most of the time we face some biological problems while analysing our data computationally. This bookmark is being created to provide list of all free online courses at one place. If you know any other good online cource resources to learn biology please let me know.3962 days ago
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Regular Expression Cheat Sheet
...r Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did not find any good and user friendly regular e...3971 days ago
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Bio++ : C Language libraries for your biological need
...y abstract and fluent to describe algorithms and interactions in a w...ogical programming? If yes there is good news for you. Bio++ 1.9.0 i...hood (NNI, including a PhyML-like algorithm).Mixed distance/ML tree...Evol Biol. 2007; 7: 242.Boussau B, Gouy M. Efficient likelihood com...3966 days ago
BioRuby :Ruby packages for biologist
...wer. Classes for Multiple alignment (Bio::Alignment), Gene Ontology(Bio::GO), PDB (Bio::PDB), FANTOM database(Bio::FANTOM), GFF (Bio::GFF) and KEGGOrthology (Bio::KEGG::KO). The...3965 days ago
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The Laboratoire de genomique fonctionelle
...produce numerous protein isoforms through alternative pre-mRNA splicing. Protein isoforms from a single gene can have diverse, and in some cases antagonistic, functions. AS plays a...3966 days ago
Bioinformatician become producer/director !!!
...ment to hona hi tha. Mera sequence mera base. Markov aapke hai kaun. Algo Banya Apne. MOTIF mil gaya....ure Dus Numbari GCG Karo Sajana Naukar NCBI Ka 1942 -- A KEGG Story Algorithm Se Program Tak Haan Mai...3937 days ago
Perl Poem: Parse it in both Perl and English!
...aceful;study if able; write me if-you-please; sort your feelings, reset goals, seek (friends, family, an..., yet. accept (yourself, changes),bind (grief, despair); require truth, goodness if-you-will, each momen...3937 days ago
Bioinformatics Algorithms (Part 1) with Pavel Pevzner, Phillip E. C. Compeau,
The course Bioinformatics Algorithms (Part 1) by Pavel Pevzner, Phillip E. C. Compeau, and Nikolay Vyahhi from University of California, San Diego will be offered free of charge to everyone on the Coursera platform. Sign up at http://www.coursera.org/course/bioinformatics.3888 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
...e: Wednesday, February 01, 2012, 3:00:00 PM Category: Wednesday Afternoon Lectu...only faster computers; it will require smarter algorithms. We show how ideas from...00:58:06 Permanent link: http://videocast.nih.gov/launch.asp?175633920 days ago
Install BLAST in Ubuntu/Linux and Window !
...a blast #Windows installation First: Download ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7...If that FTP links does not work, try HTTP instead http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7...1165 days ago
Parse a genbank file using regular expressions
...{ # protein product begins print "Translation: "; $protein = $2; $trans = 1; } elsif ($trans) { # translation still going on if (!/"/) { #...2935 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3544 days ago
Do you think it's important for everyone to pass BINC exam?
The Department of Biotechnology (DBT), Government of India has instituted BINC examination with the objective of evaluating the Bioinformatics knowledge & skills of students. Do you think it is important ?2934 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...) lab page (http://gmbe.mam.tubitak.gov.tr/en) and BOL page http://b...ics is the only way to achieve this goal. What fascinates you a...project. For this reason, the major goal of my bioinformatics compan...hmarking, researchers should have a good biological background in th...2380 days ago
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Comment on "Tools for RNA classification"
...s a comprehensive resource for RNA classification. RNAcode: RNAcode is a machine learning-based tool that uses a support vector machine (SVM) algorithm to classify RNA sequence...439 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...Ensembl. Gene annotation: Annotate the genes in each genome using gene prediction software or tools such as MAKER. Identify orthologous genes: Identify the orthologous genes between the genomes u...441 days ago