Comment on "Sibelia: A comparative genomics tool"
Basic usage =========== In this m...age of this set requires more computational time and space an...tory is output directory. You can change this by setting cmd...enomes, that found synteny block cover. First part of the fi...me synteny blocks (of multiplicity two) could be corrected u...1341 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
...Set up the environment bash source /path/to/install/mugsyenv.sh... mugsy --directory /data/output --prefix myg...data/output/mygenomes.maf. The --directory setting is also used for...lines in the FASTA files should not contain ':' or '-' to avoid par...1342 days ago
Comment on "Basic command-line to run BLAST"
Original paper https://www.sciencedirect.com/science/article/pii/S00222836058036021352 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...nd gnuplot/4.6.5) – we can plot the kmer content of the assembly compare...e first thing we need to do is to combine the reads into a single...q We will now use kat comp to create a kmer cont...download the output files to you computer using scp an...1394 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...is a tool trying to find explicit errors in the assembly based on incongruently mapped reads. It is...o form smaller (but hopefully correct) contigs. Reapr runs pr...verything’s ok! in this case, no output is good output,...he raw data for this. Run the command reapr perfectmap&n...1394 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Biology Direct journals accept short notes/ application notes https://biologydirect.biomedcentral.com/submission-guidelines/aims-and-scope1399 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
NAR Web server accept tools https://academic.oup.com/nar/issue/43/W11399 days ago
Comment on "List of GOI approved peer reviewed bioinformatics and computational biology journals"
GENOMICS AND COMPUTATIONAL BIOLOGY https://genomicscomputbiol.org/ojs3/GCB/index1400 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Methods in Molecular Biology https://www.springer.com/series/7651 Accept bioinformatics tools, such as ART etc1414 days ago
1418 days ago