Results for "Batch"
Blogs
...s sequences into NEXUS, MEGA, or FASTA formats. MySSP has a fairly simple graphical user interface (GUI) for basic use, but also has a specialized batch script interpreter to allow f...2554 days ago
Install ImageMagick from Unix Source
...or bpgdec... bpgdecchecking for bpgenc... bpgencchecking for blender... blenderchecking for xdg-open... /usr/bin/xdg-openchecking for ufraw-batch... ufraw-batchchecking for soffice... /usr/b...2169 days ago
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Bookmarks
- ...nd variant calls, using Google's cloud infrastructure. Store alignments and variant calls for one genome or a million. Process genomic data in batch by running principal componen...
3512 days ago
- ...ke queries. Compute transition/transversion ratios, genome-wide association, allelic frequency and more. Process big genomic data easily. Run batch analyses like principal compo...
3449 days ago
- +6 more Bookmarks
Pages
Awesome perl frameworks, libraries and software - PART 4
...first version) or from a list of pcap files, which can be processed in batch calio/form-input-nginx-modul...spice - the fastest way to consume threat intelligence agentzh/sshbatch - SSH::Batch for cluster...2518 days ago
Top-level pages
Next generation sequencing in R or bioconductor environment
...results from both methods by identifying their consensus peak set. Documentation [ Publication ] ChIPpeakAnno The ChIPpeakAnno package provides. batch annotation of the peaks ident...3648 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ile Output: per-sample output directory and subdirectory providing per-sample text files containing standard out being emitted from R Alamut Batch Description: high-throughp...2932 days ago
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News
Conserved Domain Database (CDD) version 3.11 released
...gions in query sequences; Domain annotation displays in CD-Search, BATCH CD-Search, and other services...all use a uniform display style. A new display option in CD-Search and BATCH CD-Search provides “standard”...3751 days ago
Surrogate Variable Analysis (SVA)
...he sva package contains functions for removing batch effects and other unwanted va...etics,2008 PNAS), (2) directly removing known batch effects using ComBat (Johnson et al. 2007 Biostatistics) and (3) removing batch effects with known control pr...3499 days ago
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Bio-Scripts
Download genomes in batch from NCBI
curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/bacteria/assembly_summary.txt' | awk '{FS="\t"} !/^#/ {print $20}' | sed -r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/)(GCA/)([0-9]{3}/)([0-9]{3}/)([0-9]{3}/)(GCA_.+)|\1\2\3\4\5\6/\6_genomic.fna.gz|' > genomic_file2286 days ago
Comments
Comment on "Running Trinity on RNA-seq !"
...e the relationships among your samples and biological replicates make sense. If there are any confounding aspects to the data, such as outliers or batch effects, you'll want to catch...2147 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...ssing has finished, in the order of input reads. [false] -B, --batch-mb INT Reads will be loaded in batches of the size specified in me...ng data. [0] -n, --numreads INT Number of reads to process per batch. Value of '-1' processes all...2316 days ago
