BOL: Results for "SeqKit"

Results for "SeqKit"

- BioJoker@biojoker
SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
FASTA and FASTQ are basic and ubiquitous formats for storing nucleotide and protein sequences. Common manipulations of FASTA/Q file include converting, searching, filte...
1983 days ago

- Neel@neelam
Reformat you fasta sequence with size. $ seqkit seq -w 50 allGenomeContacted.fa > allGenomeContacted_final.fa #Reformat #Fasta #Size
2520 days ago

- LEGE@lege
Install seqkit using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda seqkit Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1106 days ago
- LEGE@lege
Remove dupcates in multifasta file !
#Using seqkit for duplicate sequence removal seqkit rmdup -n seqs.fa -o seqs_without_duplicate.fa #Awk for duplicate sequence removal awk '/^>/ { f = !a[$0]++ } f' seqs.fa
1028 days ago
+1 more Bio-Scripts

- LEGE@lege
Comment on "Tools for Sequence translation !"
...g sequence translation. It supports several genetic codes and provides functions for translating DNA or RNA sequences into protein sequences. SeqKit: This is a command-line tool...
472 days ago