Comment on "URMAP, an ultra-fast read mapper"
map command Maps unpaired reads to a reference genome. The reference genome is stored as a UFI file created by the make_ufi command. The original FASTA file for...1342 days ago
Comment on "Sibelia: A comparative genomics tool"
...erage report 4. Files for generating a "Circos" picture 5. Interactive html-diagram of synteny blocks...cription of this format, see: https://cgwb.nci.nih.gov/FAQ/FAQformat.html#format3 Each record repres...1344 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...iency was attained by implementing a mathematically effective algorithm using C++. https://phys.org/news/2020-06-scientists-synteny-blocks-animals.html https://github.com/Comparati...1470 days ago
Comment on "Sequence assembly with MIRA 4"
MIRA5 is ready to use http://mira-assembler.sourceforge.net/docs/DefinitiveGuideToMIRA.html1593 days ago
Comment on "Instructions for Creating Your Own R Package"
This is one of the best tutorial by Fong Chun Chan http://tinyheero.github.io/jekyll/update/2015/07/26/making-your-first-R-package.html1596 days ago
Comment on "Learn Genetics Online"
This is one of the best interative genomics tutorial that I found useful. Have a look https://lab.concord.org/embeddable.html#interactives/sam/DNA-to-proteins/1-dna-to-protein.json1617 days ago
Comment on "Perl6 script to count ATGC !"
Yes, indeed intersting but complex script script in Perl v6 More at https://examples.p6c.dev/categories/rosalind.html1618 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
Benchmark (or "High-confidence") variant calls and regions:We developed an integration pipeline to utilize sequencing data generated by multiple technologies to genera...1619 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
SynChro seems to be the fastest synteny detection tool. http://www.lcqb.upmc.fr/CHROnicle/SynChro.html https://pdfs.semanticscholar.org/5320/68e328d1aaefa435eefe679f54c018e5c2aa.pd...1653 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
Bioinformatics jobs in Denmark https://www.bioinformatik.de/en/job-offers.html1878 days ago