Comment on "Commercial and public next-gen-seq (NGS) software"
VCF parsing library https://github.com/mendelics/vcf Docs are already on the excellent godoc.org : http://godoc.org/github.com/mendelics/vcf3579 days ago
Comment on "Five points for bioinformatics software/tools"
This paper "Buying in to bioinformatics: an introduction to commercial sequence analysis software" provide an in-depth overview. Link @ http://bib.oxfordjournals.org/content/early/2014/09/01/bib.bbu030.abstract.html?3580 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples http://bioinformatics.oxfordjournals.org/content/early/2014/09/10/bioinformatics.btu607.abstract3588 days ago
Comment on "R and Bioconductor Tutorial"
Tableau (statistical horsepower of R with user-friendly visual analytics) http://www.tableausoftware.com3592 days ago
Comment on "R and Bioconductor Tutorial"
There are several R packages to use image data for statistical...elp/course-materials/2010/CSAMA10/100617-pau-brixen-ebimage-2.pdf http://www.bioconductor.org/packages/release/bioc/html/EBIma...df http://www.maths.usyd.edu.au/u/jeany/Papers/springer02.pdf...3593 days ago
Comment on "Which of the following programming language is best for a bioinformatics beginner?"
...ream analysis like doing statistical analysis, create fancy graphs(ggplot2), work with rnaseq data (Deseq,degseq,etc), pathway analysis, etc, however R itself just a statistical package not generally into progr...3595 days ago
Comment on "Which of the following programming language is best for a bioinformatics beginner?"
...NGS analysis, C and C++ is a good option. It is a lower level language compared to R, PERL, & Python..... For NGS computations I suggest you to use R, as it has a lot of helpful packages and procedures. Here is...3595 days ago
Comment on "Which of the following programming language is best for a bioinformatics beginner?"
...try it out for yourself. Why Perl? Flexible, with a global repository (CPAN), so it is trivial install new modules. It has Bioperl (http://www.bioperl.org/wiki/Main_Page), one of the first biologic...3595 days ago
Comment on "Which are the best statistical programming languages to study for a bioinformatician?"
R Passes SPSS in Scholarly Use, Stata Growing Rapidly http://www.r-bloggers.com/r-passes-spss-in-scholarly-use-stata-growing-rapidly/3610 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
VarScanvariant detection in massively parallel sequencing data http://varscan.sourceforge.net/3612 days ago