Results for "blastx"
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...equences. HybPiper pipeline starts with high-throughput sequencing reads (for example from Illumina MiSeq), and assigns them to target genes using BLASTx or BWA. The reads are distrib...2767 days ago
BLAST options, setting and defaults
...be found in the BLAST 2.0 Release Notes BLASTNBLASTPBLASTXTBLASTNTBLASTXPSIBLAST Gap opening penalt...default = DUST Query genetic code:genetic code to be used in BLASTX translation of the query n/a...2001 days ago
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News
NCBIBLAST+ 2.14.1 now available
..._blastdb.pl script. And fixed a few bugs related to downloading data from the NCBI, and mt_mode crashing blastn and blastx. Check out the release...278 days ago
Bio-Scripts
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be freely distributed under GNU General Public License. # This script will parse a NCBI blastx output file and output the top...2943 days ago
Fill up the form and blast with perl
...TATATTATA'; $mech->get('http://www.arabidopsis.org/Blast/'); $mech->submit_form( form_name => 'myForm', fields => { 'Algorithm' => 'blastx', 'BlastTargetSet' => 'A...2353 days ago
Comments
Comment on "Basic command-line to run BLAST"
...several different programs that are tailored to different types of queries and databases. The most common programs are blastp, blastn, blastx, tblastn, and tblastx. Choose the program that is a...452 days ago
