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Five unique traits of effective computational biologist
...not doing research but merely writing "dry" codes. According to my supervisor most of the computational...explain their own programs output and results. Therefore, It is highly advisable to learn basic of biolog...3994 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...ly. In this article, let us review how to install Perl modules....PL, remember the case sensitivity, make and make test.# perl...package install argumentsResolving DependenciesTransaction Sum...du/pub/CPAN/(3) ftp://cpan-du.viaverio.com/pub/CPAN/(4) ftp://...3994 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3989 days ago
Online Courses for biology beginners
Most of the time we face some biological problems while analysing our data computationally. This bookmark is being created to provide list of all free online courses at one place. If you know any other good online cource resources to learn biology please let me know.3987 days ago
Bioinformatics approach to Boar Taint
...samples mapped to Sus Scrofa version 10.2 reference assembly using Bowtie2. Alignment file then used for calling SNPs and InDels inside previousy identified QTL regions on...3833 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
...gle sequences, our trans-membrane MM, correctly predicts the entire topology for 77% of the sequences in a standard dataset of 86 proteins with supervised topology. These results co...3988 days ago
Does anyone have Nanopore latest updates?
...is developing the GridION™ system and miniaturised MinION™ device. These are a new generation...w.nanoporetech.com/ https://www.nanoporetech.com/technology/the-minion-device-a-miniaturised-sensing-syst...3857 days ago
how could be a molecular dynamics be helpful studying the protein's conformation
give your views3532 days ago
Bio++ : C Language libraries for your biological need
...dents of history surely helped, it evidently satisfied a need for a...interactions in a wide variety of environments. C++ has its basis i...for rate-across sites models, with virtually any probability distri...convert text to any other type and vice versa, remove spaces, token...3991 days ago
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Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
...re rewired by mutations to cause disease. This work is supported through the development of open-source biological pathway and network databases and visualization and analysis softw...3991 days ago
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Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this.... BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI wal...3962 days ago
Perl Poem: Parse it in both Perl and English!
...ge". (The paper is available as misc/poetry.ps on CPAN.) Besides being the most prolific Perl poet, Sharon is also the most widely published, having had the following poem publ...3962 days ago
Influenza animation - flu virus mechanism
Animation of the mechanism of an influenza virus and how Crucell's antibodies target the HA1 proteins on the virus and prevent further spread...on: Daniel Lim, 2Preform Music & Sound Design: Javier Barrero, Logical Disorder P...3896 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
...lks by some of the top researchers in the biomedical sciences worldwide. Author: Dr. Bonnie Berger Runtime: 00:58:06 Permanent link: http://videocast.nih.gov/launch.asp?175...3946 days ago
Retrieve NCBI GenBank records with a range of accession numbers
...retries} >= $param{maxRetries} ) { die("Too many failures--giving up search."); }...cords} ) { message( $param{verbose}, "Retrieving $param{maxRecords} records...2960 days ago
Perl to print indivisual nucleotide from a sequence!
#!/usr/bin/perl use strict; use warnings; my $string = "ATGCTTGCGT?AAATG??CT?GCGTA"; my @chars = split("", $string); print "First character: $chars[0]\n";2958 days ago
Which of the followings are the best place to study Bioinformatics ?
...emand. An explosion in biological data has resulted from genome projects, next generation sequencing and other 'omics' techniques. Bioinformatics provides the tools to analyse and e...3460 days ago
Interview with a bioinformatician series ...
The aim of this series to interviews some notable bioinformaticians to get their views on various aspects of bioinformatics research. Hopefully these answers will prove useful to others in the field, especi...3460 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...nstitüte. Hopefully, this interview will prove useful to others...can find out more about Dr Altan by visiting his (well documented) l...MARK, I am also in preparation of having a side project that aims fo...n why I like this package is, it provides lots of useful tools for c...2406 days ago
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Comment on "Benchmarking Perl Module !"
...e done using the Perl Benchmark module, which provides a simple and standardized...ce of your Perl module to other modules or to previous versions of your own modul...rformance of the module. The Benchmark module provides a simple and standardized...459 days ago
Comment on "Short-read assembly using Spades !"
...assembly: If the quality of the initial assembly is not satisfactory, SPAdes allows for an iterative assembly approach where the output from the previous assembly is used as input...459 days ago