Results for "anchors"
Bookmarks
...gram that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes as anchors. This is the toolset for gene...2719 days ago
- ...t are orthologous in multiple genomes as map "anchors." Given K genomes, the steps...es in this graph. These cliques are potential anchors to be used in the map. Start...ed to output the exact genomic coordinates of anchors within each orthologous segme...
2673 days ago
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Top-level pages
Commercial and public next-gen-seq (NGS) software
...e novo and reference assembly of Illumina, SOLiD and Roche FLX data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before ass...3546 days ago
Software packages for next gen sequence analysis
...e novo and reference assembly of Illumina, SOLiD and Roche FLX data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before ass...3270 days ago
Video
Bioinformatics -- Understanding of living systems through information science
...developed by the Sakakibara Lab calculates homologous sequences called anchors, which are conserved between species. If the genome is considered as a long text, then anchors can be thought of as words....3944 days ago
Comments
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...th end-to-end extension. Uses Myers' global alignment to align between anchors. anchorgotoh - anchored alignment with Gotoh. Uses Gotoh global alignment to align between anchors. [anchor] -w, --approach STR...2320 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such an informative blog. I notice MCScan is missing. MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify putative homologous chromosomal regions, and align these regions using genes as anchors. More at http://www.ncbi.nlm.nih.gov/pubmed/222176003701 days ago
