Structural variation: the hidden genomic treasure
...jects have revealed substantial amounts of genetic variation between individuals extending beyond single nucleotide polymorphisms (SNPs) and short indels. Structural Variations (SVs)...2755 days ago
2582 days ago
3705 days ago
3061 days ago
Bioinformatics approach to Boar Taint
...ted from these samples mapped to Sus Scrofa version 10.2 reference assembly using Bowtie2. Alignment file then used for calling SNPs and InDels inside previousy identified Q...3841 days ago
Commercial and public next-gen-seq (NGS) software
...s, clean and filter contigs, look for snps and indels., filter snps, do statistics...a fast and memory-efficient manner. Robust to INDELs and MrsFAST has a bisulphite...detection tool. It detects homozygous SNPs and indels by aligning shotgun reads to...3571 days ago
Software packages for next gen sequence analysis
...a fast and memory-efficient manner. Robust to INDELs and MrsFAST has a bisulphite...eqMap - Supports up to 5 or more bp mismatches/INDELs. Highly tunable. Written by H...detection tool. It detects homozygous SNPs and indels by aligning shotgun reads to...3294 days ago
3598 days ago
2415 days ago
Visiting Scientist - Computational Genomics (two positions)
...eration sequencing DNA and RNA data Data mining and development of pipelines and troubleshooting Genome diversity analysis such as SNPs, Indels, Structural Variations, popul...3641 days ago
2006 days ago
2127 days ago
Samtools commands for bioinformatician !
...ej.fasta sal_sej_sorted.bam.bam > sal_vars.bcf ### calling snp and indels # -c : find snp # -v : outp...e "bcftools" to see current version and commands ### calling snp and indels with no frequency threshold...1655 days ago