4002 days ago
Useful Links for Bioinformaticians
...cular Sequence Analysis Exploring Distant Protein Sequence Relationships Sequence Analysis tutorial The Sequence and Structure Searching Site Flexible Information Visualization of...3185 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...14):1754-60, 2009. PubMedCentral Improving SNP discovery by base alignment quality. Li H, Bioinformatics 27(8):1157-8, 2011. PubMed BEDTools: a flexible suite of utilities for compar...3834 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...gram GenomePop just to manage SNPs under more flexible and useful settings. If you n...unl.edu/~cstrope/isg/Indelible A powerful and flexible simulator of biological evolu...//seqsimla.sourceforge.net/Serial NetEvolve A flexible utility for generating serial...3792 days ago
List of In-silico Binding Site Prediction Tools
...lculated analytically. CASTp can be used to study surface features and functional regions of proteins. CASTp includes a graphical user interface, flexible interactive visualization, as...3799 days ago
Next generation sequencing in R or bioconductor environment
...hortRead, Rsamtools, rtracklayer, GenomicFeatures and BSgenome. Compared to the IRanges container, the GRanges/GRangesList classes are more flexible and extensible to store addit...3680 days ago
Commercial and public next-gen-seq (NGS) software
...sumes the software tool REPuter, but is much more general, with a very flexible user interface, and improved...and carry out post-analysis. ZOOM is developed to be highly accurate, flexible, and user-friendly with speed...3574 days ago
Software packages for next gen sequence analysis
...sumes the software tool REPuter, but is much more general, with a very flexible user interface, and improved...and carry out post-analysis. ZOOM is developed to be highly accurate, flexible, and user-friendly with speed...3297 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...A Description: Annotation, Visualization, and Impact Analysis; “The tool is based on coupling a comprehensive annotation pipeline with a flexible visualization method. We leve...2964 days ago
Awesome perl frameworks, libraries and software - PART 1
...t Test-More/test-more - Test2, Test::More, Test::Simple and Test::Builder Perl modules for writing tests smtpd/qpsmtpd - qpsmtpd is a flexible smtpd daemon written in Perl...2544 days ago