Source Code and Pseudo Code !!
...dif; Call ... with (parameters); Call; Return ....; Return; When; Always use scope terminators for loops and iteration. As verbs, use the words Generate, Compute, Process, etc. Words...2711 days ago
Awesome perl frameworks, libraries and software - PART 1
...ur/Perl_Companies - A list of companies which use Perl. Initially generated from postings to jobs.perl.o...t::TCP for perl timbunce/java2perl6 - Parse Java class files and generate corresponding Perl6 Class and...2541 days ago
Run miniasm assembler on nanopore reads !
...e a consensus step. It simply concatenates pieces of read sequences to generate the final unitig se...AONTself.paf | awk '{print $1}'| sort|uniq > invertedrepeat.list Generated a few palindrome and repeats...2382 days ago
Bioinformatics Web Application Development with Perl
...l database works. The power and maintainability you receive is well the small cost of the learning curve. Even better, DBIC can manage (and even generate) your database schema for you...2374 days ago
PerlOneLiner for Bioinformatician
...= 20; $b = $m = 35; ($m,$n) = ($n,$m%$n) while $n; print $a*$b/$m' # Generate 10 random numbers between 5 a...= Algorithm::Permute->new($l); print @r while @r = $p->next' # Generate the power setperl -MList::Pow...2354 days ago
Gap filling or Contigs extensions tools !
...3. If you don't have a complete assembly of the region of interest, generate an STS for each end of each c...STSes, subclone these clones into a paired-end sequencing vector, and generate paired-end reads for this lib...2217 days ago
Parallel Processing with Perl !
...ger to manage the number of forks you want to generate (number of processors you wan...hen one child finishes, Parallel::ForkManager generates a new one and thus you will...about concatenation of the output each child generates, since it does take some tim...2132 days ago
Steps to find all the repeats in the genome !
...(in this case, 2 and 9). Analyze the output: RepeatMasker will generate several output files, includi...ontaining the lengths of the reference elements. This script will generate several output files, includi...300 days ago