Results for "Tree Approach"
Top-level pages
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-.../hackmap.blogspot.de/2008/11/python-interval-tree.htm...3577 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and analysis of DNA sequen...and SNPs. More @ https://play.google.com/store/apps/details? TimeTree: iPhone/iPad TimeTree is...3569 days ago
- Pathway Analysis is usually performed with aim to enrich the genes with their funct...ene products. However, existing tools and dbs mainly based on knowledge driven approach in which pathways will be ide...
3524 days ago
Software packages for next gen sequence analysis
...providing an efficient suffix tree library, seed-and-extend alignmen...arch). Uses a de Bruijn graph approach. * MIRA2 - MIRA (Mimicking In...ost k-mers using a DNA prefix tree. Authors are René Warren,...ative to Controls. a two-pass approach for scoring ChIP-Seq data rel...3270 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes ins...g pathways. These biological pathways and networks are not only an appropriate approach to visualize molecular reacti...2315 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Sm...in of interest Output: a report containing information from a “decision tree&rdq...2937 days ago
Genome Assembly Tools and Software - PART1 !!
...bias as compared to mapping based approaches. TransPS 1.1.0 &...nd Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data...ly program) is a de novo assembly approach and its implementation based...and a corresponding phylogenetic tree and then assembles the contigs in...2714 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two di...origin of man to the origin of life. evolutionary tree -- A diagram which depicts th...n -- Joining of separate lineages on a phylogenetic tree, ge...2490 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...he Overlap-Layout Consensus (OLC) approach without the necessity of...port to assess uncertainty in the tree topology (k-mer based) Softw...on and estimation of phylogenetic trees using SNPs (based on k-mer...bundances (uses composition-based approach and non-negative least square...2399 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” ,...nbsp;4.01 HGT detection / download binary (!license!) 20181081 TREE-PUZ...878 days ago
