Useful Publications and Websites for Deep Sequencing Data Analysis
...cing data. Auer & Doerge, Genetics 185(2):405-16, 2010. PubMedC...Two-stage Poisson model for testing RNA-seq data. Auer and Doerge...st] Detecting and annotating genetic variations using the HugeSeq...ng by sequencing Genome-wide genetic marker discovery and genotypi...3797 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ss/CDPOP CDPOP is a landscape genetics tool for simulating the emergence of spatial genetic structure in populations resu...ulates interactions among two genetic and one environmental factor...sequence evolution along phylogenetic trees. http://tree.bio.ed.ac....3755 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Predictio...than all server methods that were tested at CASP8. Testing on the CASP9 set showed no st...entifying protein surface cavities. In large-scale testing on a diverse set of single- a...3762 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and analysis of DNA sequencing file...detailed information such as Gene Ontology, mutant phenotype, and protein and genetic...3559 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
...y Enterovirus Research Centre Genetic Research Centre Institute o...nology International Centre for Genetic Engineering and Biotechnology...National Accreditation Board for Testing & Calibration Laboratorie...(CPRI) National Bureaue of Fish Genetic Resources (NBFGR) National B...2588 days ago
2731 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ts somatic SNVs with multiple testing correction, uses Fisher&rsquo...ts for monogenic and sporadic genetic diseases”; uses ANNOVAR...tasets: training, validation, testing, and ClinVar_ESP...The ClinVa...is with an online network for genetic professionals; Different degr...2926 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists disco...to increase. On the other hand; In genetics, the term palindrome refers...le was I ere I saw elba")—with genetic palindromes it does not matte...replaces the thymine found in DNA), genetic...2229 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, l...Existing Faults to Enable Controlled Testing Studies for Java elastic/ela...typester/perldojo - online perl testing! tsee/ZeroMQ-Perl - Per...t::WWW::Mechanize, a Perl object for testing web pages perl-ldap/perl-lda...2507 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two diff...de or taxon die, the group is said to be extinct. genetic marker -- A DNA sequence that...of changes in character states is the best. phylogenetic...2480 days ago