Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a fi...g TransPS is a pipeline for post-processing of pre-assembled transcriptom...er can scales up to 1024 cores when processing Fish and Yanhuang dataset, an...A-Seq Assemblies CLEAT is a post-processing tool for CLEavage site Analys...2728 days ago
Awesome perl frameworks, libraries and software - PART 1
...nment scheme that allows for the processing of very long (and possib....docker.io (official Perl Docker image) duckduckgo/p5-app-duckpan&n...r Perl joshua-hull/Reddit-Image-Scraper - Perl script to down...ing them on multiple queues, and processing them later. perl6/specs ...2532 days ago
Tools for bacterial whole genome annotation
...in 2005 has been replaced with an upgraded version that is capable of processing a larger data volume.&nb...orientates contigs and estimates the sizes of gaps between them; (ii) IMAGE uses paired-end reads to extend co...2374 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynami...Perl web apps independent of server and with the possibility to share custom processing behaviors. In other words, i...2364 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze a circuit (a “network” of interconnected components). The Network analys...2331 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structured data and is mostly used for pattern scanning and processing. It searches one or more file...2322 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it ca...on - Tom D. De Smedt (PDF) Natural Language Processing with Python (3.x) Non-P...eb Development with Python (3.3 - 3.x) Text Processing in Python - David Mertz...2298 days ago
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Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "GapFiller: a de novo assembl....sanger.ac.uk/resources/software/pagit/ In particular, take a look at the IMAGE tool...2208 days ago
Learning Python Programming - a bioinformatician perspective !
Python Programming is a general purpose programmin...its rich set of utilities and libraries for data processing and analytics tasks. In the c...its easy-to-use features which supports big data processing. In this tutorial series art...2225 days ago