Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference...that extends the CLCbio Main Workbench software. Includes SNP d...eads to a FASTA reference genome. By Andrew D. Smith and Zhenyu...the Max-Planck-Institute for Molecular Genetics. * SSAKE - The...lling * Rolexa - R-based framework fo...3294 days ago
Comprehensive list of visualization tools for biological pathways
...eir function not in isolation but in a tightly controlled network of interactions and reactions...se biological pathways and networks are not only an appropriate approach to visualize molecu...ityPath JDesigner Graphical modeling environment for biochemical reaction networks http://jdesigner.sourcefor...2339 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including alignmen...Interpretation, etc. Supports workflows “one can import the sa...e, somaticsniper (User guide; workflow page) Input: tumor and n...uo;intensive variant analysis workflows”; “enriches...2960 days ago
Worldwide funding agencies to fund your bioinformatics research !!
...tion sponsors thinkers in Germany and abroad alike. National Pa...ch projects to this governing body, concerned largely with ecolo...to junior faculty (M.D.s and Ph.D.s) to conduct research that w...romuscular diseases. MDA also helps spread this scientific knowledge and train the next gener...2989 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats?...960's scientists discovered that many...pied to another region of the genome.Interspersed RepeatsProcessed...to relate palindrome formation to mol...still reads CGAAGC. The European Molecul...roup Nucleic:repeats). There are many on-line servi...2263 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering.... With command-line versions of tools, as you kno... Requirement: GeneSCF only wor...sted on Ubuntu, Mint and Cent OS. Other distributions of Linux might work as well. &n...2923 days ago
Genome Assembly Tools and Software - PART1 !!
...ed model. We therefore list many genom...cks a thorough documentation, but you can direct questions to me if the README.txt...uates genome assemblies.QUAST works both with and without a reference genome. The tool accepts multiple...without further computational knowledge can easily operate the pipe...2737 days ago
Awesome perl frameworks, libraries and software - PART 1
...from parsed results. Formerly known as bounceHammer 4: an error...n into a database. ( Formerly known as imap-dmarcts ) prepan-de...rrit) hooks fayland/perl-www-contact - WWW::Contact - Get contacts/addressbook fr...h a plugin system cooldaemon/AnyEvent-RabbitMQ - An asynchron...2541 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have...erent ancestors. ancestor -- Any...ent in one or more subclades, but not all, of a clade under cons...ly related to each other than any...p -- In a cladistic analysis, any taxon used to help re...cestor of all of its members, but not all of th...2514 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathem...nalyze a circuit (a “network” of interconnected components). The Network analysis provides the ability...strator Petri nets for modeling and simulating biological...ization, mining, analysis and modeling of biolo...2340 days ago