Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociat...2265 days ago
2160 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput shor...2740 days ago
Awesome perl frameworks, libraries and software - PART 1
...rtak/webmachine-perl - A Perl port of Webmachine rhuss/jmx4perl - JMX access tools and modules Perl/docker-perl - Dockerfiles for index.docker.io (official Perl Dock...2543 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outp...2384 days ago
2345 days ago
List of visualization tools for network biology
...n of large networks http://www.ondex.org/ Osprey Visualization and annotation of biological networks http://biodata.mshri.on.ca/osprey/servlet/Index Pajek Analysis and vi...2342 days ago
Awk for Bioinformatician and computational biologist
...TATATATATAcontig5 ACTTTATATATT You can also store data in the memory with the syntax VARIABLE_NAME[KEY]=VALUE which you can later use through for (INDEX in VARIABLE_NAME) command: $...2334 days ago
Computational resources for TE discovery and TE detection
...Gluer http://nbcr.sdsc.edu/euler/intro_tmp.htm RepeatMasker http://www.repeatmasker.org/ RepeatRunner http://www.yandell-lab.org/repeat_runner/index.html RepeatScout http://rep...2328 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-c...904 days ago