BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at onc...is different than with ordinary mapping. If a genome (say, human)...an exact repeat somewhere, reads mapping to it will be mapped ambi...lit is a tool that bins reads by mappi...almonella reads)clean.fq (unmapped...2366 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe '...h its absolute valueperl -alne 'print "@{[map { abs } @F]}"' # Find the to...of fields that match a patternperl -alne 'map {...andom 8 character passwordperl -le 'print map { (...2354 days ago
List of visualization tools for network biology
...n networks and protein interaction maps. http://www.ariadnegenomics...bri.fr/TulipDrupal/ VANESA Automatic reconstruction and anal...hical Notation Process Description maps) http://arcadiapathways.sourc....ut.ee/graphweb/ Hubba Web-based service to explore the essential node...2340 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they are written in C)...cgcc -shared -Wl,-soname,libz.so.1,--version-script,zlib.map -...sr/bin/perl" "/usr/share/perl/5.22/ExtUtils/xsubpp" -typemap "/u...2270 days ago
Frequent Paired-end reads (PE 2x100) mapping command lines
bowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq...andom -o SAM -f r1.fq r2.fq -i 500 50 -d hs37m-k14s3.novo > r12.novo.sam smalt map -f...2234 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced extensively...tation and phasing, including a mode for genotype calling. Requires fine-scale linkage map QC...2148 days ago
World promising health companies !
The health care industry is expected to sustain stable g...ealth Group, Inc. (UNH) is the largest health care services company in the world, servin...provides a wide range of health care products and services, such as health maintenance...1638 days ago
Frequent parameters for bioinformatics tools !
Third party executable parameters and options. Trimmomatic “ILLU... RGI (ABR) --input_type contig bowtie2 (mapping) --sensitive minimap2 (m...1337 days ago
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