Results for "and specific"
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Ligand Docking Tools and Software !
Ligand docking referred to cases where small molecule (“ligand”) is being docked into...chastic (GA) Flexible ligand and partially flexible target Ar...tics of both the binding site and the ligand to be investigated...d would be more suitable in a specific context is difficult. We enco...2247 days ago
Creating conda environment for python2.7
...create an environment with a specific package: conda crea...a specific version of Python and multiple packages: conda...sp;conda create command. For details, run conda ...oceed ([y]/n)? y Downloading and Extracting Packageswheel 0.31.0: #...2235 days ago
Gap filling or Contigs extensions tools !
...oftware, it is useful only in some specific situations. Take a lo...SSPACE (http://www.baseclear.com/landingpages/basetools-a-wide-rang...mc.edu/content/bcm-hgsc-software), and SCARPA (http://compbio.cs.tor...erlapping your region of interest, and the set S of reads those contigs c...2210 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads.fastq.gz | racon -t 24 long_...2155 days ago
Tools for Geospatial data analysis !
...which allow you to manipulate and analyze spatial data in a var...s some tools for working with specific types of geospatial data...e, the H3 library is designed specifically for working with hexagona...https://lnkd.in/daGs2WYq GeoPandas - https://lnkd.in/dBTFKKV3 Geop...456 days ago
Bioinformatics tools for genome assembly !
...21: SPAdes: An assembler specifically designed for single-cell and multi-cell bacterial genomes,...nsumption, suitable for small and medium-sized genomes. Un...n assembly tool, consider the specific requirements of your project, the available data types, and the computational resources at you...331 days ago
Steps to find all the repeats in the genome !
...u want the output files to be saved. <min_length> and <max_length>: The minimum and maximum lengths of the repeat...member to adjust the parameters and options according to your specific needs and the characteristics...293 days ago
Mitochondrial genome assembly tools !
...s MITObim: MITObim is a tool specifically developed for the it...s with a reference mitogenome and iteratively refines the assem...ochondria. It utilizes a seed-and-extend algorithm and is suitable f...t's important to consider the specific characteristics of your seque...288 days ago
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