Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
...rez Gene ID (UIDs) or Official gene symbols as a input. GeneSCF supports more organisms from V1.1. Examples to download database as simple text file using GeneSCF "prepare_database" module, 1) https://www.biost...2887 days ago
Genome Assembly Tools and Software - PART1 !!
...mbly Clotho provides persistence to such objects through relational databases that at least partially correspond the Clotho data model. Beyond database access and data model API sup...2701 days ago
Awesome perl frameworks, libraries and software - PART 1
...is - Perl binding for Redis database pplu/aws-sdk-perl - A c...roids! rjust/defects4j - A Database of Existing Faults to Enable... - Perl module representing database URIs semifor/twirc - Tw...er-perl - Create MaxMind DB database files mattn/p5-Growl-Any&nbs...2504 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...earch; LCA assignment of short reads based on a comprehensive sequence database Software (C++) https://ccb....nt of taxonomic labels to reads by k-mers searches in precomputed database Software (C++/Python) https...2386 days ago
Tools for bacterial whole genome annotation
...oad contigs), uses the subsystems in the SEED database and provides detailed an...notation pipeline depends on several internal databases and is not currently availab...y annotate their genomes and to create genome databases. It identifies repeats, alig...2347 days ago
Bioinformatics Web Application Development with Perl
...sms Perl's venerable DBI module has been the focal point of database access since its invention. Its design allows it to provide the same interface to huge relational databases and flat files alike through...2337 days ago
List of visualization tools for network biology
...d analysis of biological networks and Petri nets based on life-science database information http://agbi.tech...l for integration of user-given stoichiometric metabolic models into a database collected from public data so...2303 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...put of command find file — find all instances of file in real system locate file — find all instances of file using indexed database built from the updatedb comma...2296 days ago
2205 days ago
List of non-commercial NGS genotype-calling software
.... A list of programs for genotype and SNP calling : SOAP2 http://soap.genomics.org.cn/index.html Single-sample High-quality variant database (for example, dbSNP) Package...2111 days ago