Results for "genome structure"
Top-level pages
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa whic...that also possessed that feature. homology -- Two structures are considered homologous wh...herited from a common ancestor which possessed the structure. This may be difficult to det...2490 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq d...https://github.com/bioinfo-ut/GenomeTester4/ Phy-Mer Reference-i...SNPs (dbSNP and Affymetrix's Genome-Wide Human SNP Array) from ra...., ONT or PacBio reads, draft genomes) Software (Perl) https://g...2399 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was...ades.py will show you the options: spades.py This produces: SPAdes genome as...
2379 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the&...s and reveal cell-type-specific expression changes in type 2 diabetes http://genome.cs...2378 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsyst...ation (if you have only a few genomes to annotate). Prokka &...y useful if you have loads of genomes or need to annotate a pangen..., as well as other functional genome units such as structural RNAs...2359 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (s...2342 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results bu...need publication ready figure of genomes. Following are the list of genome alignment visualization tools...ation information of a reference genome http://bioinformatics.zj.cn/...and visualizing sequenced human genomes...2311 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation a...a/LTR_Struc.html LTR_MINER http://genomebiology.com/2004/5/10/R79/supp...urceforge.net/ REPuter http://www.genomes.de/ RetroMap http://www.burch...2302 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze...view of the workflow which includes Transcriptome/ Genome alignment, Differential expre...ering, Venn diagrams, CVA, UMI support and elastic genome br...2292 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material betw...NA must enter the host nucleus, integrate into the genome, and in more complex organism...otential for genetic incompatibility with the host genome an...878 days ago
