Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been wi...es and reveal cell-type-specific expression changes in type 2 diabetes http://genome.cshlp.org/content/early/2016/...2402 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (up...ation (if you have only a few genomes to annotate). Prokka &...y useful if you have loads of genomes or need to annotate a pangen..., as well as other functional genome units such as structural RNAs...or annotating fully sequenced genomes. PAGIT: Provides a toolkit...2383 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains an exac...2366 days ago
List of visualization tools for genome alignments
Genome browsers are useful not onl...need publication ready figure of genomes. Following are the list of genome alignment visualization tools...ation information of a reference genome http://bioinformatics.zj.cn/...and visualizing sequenced human genomes http://www.svaproject.org...2335 days ago
Computational resources for TE discovery and TE detection
...ransposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annota...rge.net/ REPuter http://www.genomes.de/ RetroMap http://www.bu...les.html TE nest http://www.plantgdb.org/prj/TE_nest/TE_nest.htm...2326 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that...rview of the workflow which includes Transcriptome/ Genome alignment, Differential expre...tering, Venn diagrams, CVA, UMI support and elastic genome browser used in RNA-Seq workf...2316 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual mov...DNA must enter the host nucleus, integrate into the genome, and in more complex organism...potential for genetic incompatibility with the host genome and mismatch between the nich...902 days ago
Some useful Bioinformatics links
Reference-free prediction of rearr...assembly of the European eel genome from nanopore sequencing read...-scale scaffolding of de novo genome assemblies based on chromatin...ed on the FMD-index for large genomes https://github.com/lh3/ferm...oter_tutorial//Tutorial/CustomGenomes/CustomGenomes.html https://...2293 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key chall...ingle‐nucleotide variants as well as insertion/deletions variants in the human genome”2255 days ago
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