Results for "plant genome"
Top-level pages
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling...aired reads" or "Toward almost closed genomes with GapFiller". There are a...take a look at the IMAGE tool: http://genomebiology.com/2010/11/4/R41...n't interested in assembling the full genome, just the 100 kb part you're...2208 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps...r example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabula... 2. sseqid subject (e.g., reference genome) sequence id 3. piden...2181 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) d...ttp://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit Multi-sample...er.ac.uk/resources/software/margarita) MaCH http://genome.sph.umich.edu/wiki/Thunder M...2139 days ago
Bioinformatics in Africa:- Part 1
The Institut Pasteur de Côte d’Ivoire was cre...;training in bioinformatics and genome data analysis. Sho...07 a yearly regional course of initiation and using genome data analysis with the partic...1233 days ago
Bioinformatics tools for genome assembly !
...is a list of some widely used genome assembly tools as of my last...cell and multi-cell bacterial genomes, as well as small eukaryotic...assembling large and complex genomes. MaSuRCA: A hybrid asse...le for small and medium-sized genomes. Unicycler: A hybrid as...329 days ago
Steps to find all the repeats in the genome !
To find repeats in a genome from 2 to 9 length using a Perl script,...epeatMasker website[0]. Prepare the genome sequence: Make sure you have the genome sequence in a FASTA file form...ic needs and the characteristics of your genome....291 days ago
Mitochondrial genome assembly tools !
...cing (NGS). The mitochondrial genome is relatively small compared...ine to assemble mitochondrial genomes and annotate mitochondrial g...for annotating mitochondrial genomes. It integrates multiple soft...PAdes: SPAdes (St. Petersburg genome assembler) is a versatile gen...285 days ago
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