Results for "plant genome"

Top-level pages

  • Gap filling or Contigs extensions tools !

    There are many tools to perform gap filling...aired reads" or "Toward almost closed genomes with GapFiller". There are a...take a look at the IMAGE tool: http://genomebiology.com/2010/11/4/R41...n't interested in assembling the full genome, just the 100 kb part you're...

    2208 days ago

  • Understanding BLASTn output format 6 !

    BLASTn output format 6 BLASTn maps...r example gene sequences against a reference genomeblastn  -query genes.ffn  -subject genome.fna  -outfmt 6 BLASTn tabula... 2.  sseqid  subject (e.g., reference genome) sequence id  3.  piden...

    2181 days ago

  • List of non-commercial NGS genotype-calling software

    Meaningful analysis of next-generation sequencing (NGS) d...ttp://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit Multi-sample...er.ac.uk/resources/software/margarita) MaCH http://genome.sph.umich.edu/wiki/Thunder M...

    2139 days ago

  • Bioinformatics in Africa:- Part 1

    The Institut Pasteur de Côte d’Ivoire was cre...;training in bioinformatics and genome data analysis. Sho...07 a yearly regional course of initiation and using genome data analysis with the partic...

    1233 days ago

  • Bioinformatics tools for genome assembly !

    ...is a list of some widely used genome assembly tools as of my last...cell and multi-cell bacterial genomes, as well as small eukaryotic...assembling large and complex genomes. MaSuRCA: A hybrid asse...le for small and medium-sized genomes. Unicycler: A hybrid as...

    329 days ago

  • Steps to find all the repeats in the genome !

    To find repeats in a genome from 2 to 9 length using a Perl script,...epeatMasker website[0]. Prepare the genome sequence: Make sure you have the genome sequence in a FASTA file form...ic needs and the characteristics of your genome....

    291 days ago

  • Mitochondrial genome assembly tools !

    ...cing (NGS). The mitochondrial genome is relatively small compared...ine to assemble mitochondrial genomes and annotate mitochondrial g...for annotating mitochondrial genomes. It integrates multiple soft...PAdes: SPAdes (St. Petersburg genome assembler) is a versatile gen...

    285 days ago