PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'per...number of fields that match a patternperl -alne 'map { /regex/...nt hex($ip)'perl -le 'print unpack("N", 127.0.0.1)'perl -MSock...# Match an IP addressmy $ip_part = qr|([0-9]|[0-9][0-9]|1[0-...2440 days ago
List of visualization tools for network biology
...alyzing and visualizing biochemical pathways and networks http://ww...http://www.cellillustrator.com COPASI Analysis of biochemical ne...a.mshri.on.ca/osprey/servlet/Index Pajek Analysis and visual...s.tau.ac.il/~bnet/networkblast.htm Pathview Tool set for pat...2426 days ago
List of visualization tools for genome alignments
...in analysis pipelines allows the optimization of parameters, which leads to bette...w Alignments of huge-scale single-end and pair-end short reads http://omi...; Simple and fast text alignment viewer; NGS compatible http://www.htslib.org/...2422 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...ts of file less file — view file with page navigation head file &...show disk usage du — show directory space usage free — sho...d your key to host for user to enable a keyed or passwordless login ping host&nbs...2419 days ago
Awk for Bioinformatician and computational biologist
...that match with the specified patterns and then perform associ...h line, it matches with given pattern in the given order, if m...s that matches with the given patterns which is the default ac...the record delimited by whitespace character by default and st...2418 days ago
Computational resources for TE discovery and TE detection
...enome structure and evolution as well as their impact on genome sequencing, assem...//genomebiology.com/2004/5/10/R79/suppl/s7 LTR_par http://www.eecs.wsu.edu/~ana...Cluster Finder http://www.mssm.edu/labs/warbup01/paper/files.html TE nest http:...2412 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...oo. The tool also supports biological contextualization on the set of interesting genes from the data by allowing downstream analysis such as GO and pathway analysis. The product ha...2402 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
...d germline in order to be transmitted to offspring. Once there, it must not experience strong negative selection, despite potential for genetic incompatibility with the host genome...988 days ago
Python learning resources for bioinformatics and computational biologist !
...on - Willi Richert & Luis Pedro Coelho, Packt. (Just fill the field...n (PDF) Learning Python - Fabrizio Romano, Packt. (Just fill the field...Wierzbicki (2.5) The Little Book of Python Anti-Patterns (Source) The Prog...2393 days ago
2384 days ago