2362 days ago
PerlOneLiner for Bioinformatician
...------- # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n" }'perl -pe '$_ .= "\n"'perl -pe 's/$/\n/'perl -nE 'say'...printf("%x", 255); print $hex'perl -le '$num = "ff"; print hex...matches = $text =~ /regex/g; PERL TRICKS----------- # Print...2359 days ago
2348 days ago
List of visualization tools for network biology
...bout the network as a whole at the species and/or population level.&...s/BioMiner Cell Illustrator Petri nets for modeling and simu...tp://acgt.cs.tau.ac.il/pivot/ ProCope Prediction and evaluat...rotein interaction networks across species to infer protein complexe...2345 days ago
List of visualization tools for genome alignments
...ing result drafts. Its integration in analysis pipelines allows the optimization...esulting alignments are summarized with a ‘percent identity plot’ (pi...atasets, providing a smooth and intuitive user experience at all levels of genome...2340 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...or NGS analysis as well as giving experience in writing one-liners....tory and show in long format to see perimissions, size, and modifica...— force kill process id pid Permissions ls -l — l...ash; execute only 0 — no permissions chmod 600 file ...2337 days ago
Awk for Bioinformatician and computational biologist
...ntain lines that match with the specified patterns and then perform associated actions. The...n in the given order, if matches performs the corresponding actio...wo important patterns which are specified by the keyword called B...on each line in the order they appear, for example, if we want to...2336 days ago
Computational resources for TE discovery and TE detection
...fo.lifl.fr/mreps/ PILER http://www.drive5.com/piler/ PLOTREP http://repeats.abc.hu/cgi-bin/plotrep.pl RepBase http://www.girinst.org/ RepeatFinder http://cbcb.umd.edu/s...2330 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...is such as GO and pathway analysis. The product has an option to create pipelines for time consuming jobs...PSTRegister here: http://www.strand-ngs.com/webinar_registration About Speaker: Dr. Suman Kapoor, Manag...2321 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
...make it far rarer in multicellular eukaryotes. In order for a eukaryotic species to gain a gene by HGT, fo...rmline in order to be transmitted to offspring. Once there, it must not experience strong negative selecti...907 days ago