Bioinformatics tools developed for Oxford Nanopore data analysis !
...graph. List of analysis tools developed for Oxford Nanopore data BWA Fast nanopore data tuned alignment tool https://github.com/lh3/bwa GraphMapMapper for long and error-prone read...2459 days ago
Useful Bioinformatics Analysis Tools !
...nbsp; Deorowicz, S., Danek, A., GTShark: Genotype compression in large projects, biorxiv.org, 2020; (): Whisper Experimental mapper of whole genome sequencing da...1002 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.I...sents a significant improvement over the state-of-the-art for PacBio read mappers. GraphMap was also designed...3363 days ago
3089 days ago
Genome Assembly Tools and Software - PART2 !!
...AlgorithmsScarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Oth...2824 days ago
Awesome perl frameworks, libraries and software - PART 4
...ng Extopus as its frontend nekokak/p5-Teng - simple DBI wrapper/ORMapper faiproject/fai - non-in...l for cmu-sphinx yappo/p5-Data-Model - Data::Model is Data/Object Mapper and Model Manager. xaicron/p...2633 days ago
Commercial and public next-gen-seq (NGS) software
...s are Guy St C Slater and Ewan Birney from EMBL. C for POSIX. GenomeMapper - GenomeMapper is a short read mapping tool...g at Stanford University. TopHat - TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns...3657 days ago
Software packages for next gen sequence analysis
...are Guy St C Slater and Ewan Birney from EMBL. C for POSIX. * GenomeMapper - GenomeMapper is a short read mapping tool...at Stanford University. * TopHat - TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns...3381 days ago
Long reads mapper bash script !
...h #only for LONG READS mapping #USAGE: runMapper.sh minimap2 ref.fa reads.fa/f...less arguments provided" echo "#USAGE: runMapper.sh minimap2 ref.fa reads.fa/f...d -o $fileName.out.sam else echo "Unknown mapper name and parameter !" fi...2261 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...aximum allowed length of unaligned read part to trigger a bwt-based query. [300] -k --bwt-kmer [INT] Length of BWT-seed. [19] -f --fastest Use GEM-mapper's fastest mode(--fast-mapping...2261 days ago
2261 days ago