Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.3697 days ago
Comment on "Does anyone have Nanopore latest updates?"
Results from Oxford Nanopore's MinION are promising, but fall short of high expectations. Find more at nature news http://www.nature.com/news/data-from-pocket-sized-genome-sequencer-unveiled-1.147243718 days ago
Comment on "R and Bioconductor Tutorial"
...searches [1] Biostrings – Reading sequences in R [2] BSGenomes – Reading in complete genomes and BioC annotation data [3]...nnotations. rtracklayer – interface to online and other genome browsers. chipseq & ChIP...3719 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
r2cat (related reference based contig arrangement tool) can be used to order a set of contigs with respect to a single reference genome. This is done by mapping the contigs onto the r...3723 days ago
Comment on "Does anyone have Nanopore latest updates?"
Recently data from pocket-sized genome sequencer unveiled. Results from Oxford Nanopore's MinION are promising, but fall short of high expectations http://www.nature.com/news/data-from-pocket-sized-genome-sequencer-unveiled-1.147243769 days ago
3858 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
A survey of tools for variant analysis of next-generation genome sequencing data http://bib.oxfordjournals.org/content/early/2013/01/21/bib.bbs086.full3860 days ago
3867 days ago
Comment on "Five unique traits of effective computational biologist"
...in Academia. PLoS Comput Biol7(1): e1002001. [link] Oshlack A (2013) A 10-step guide to party conversation for bioinformaticians. Genome Biology14:104 [link] Via A,...3878 days ago
3933 days ago