2732 days ago
1320 days ago
Computer simulation of genetic mechanism !!
...tistical inference based on approximate Bayesian computation. https://sites.google.com/site/baysicsabc/ BEERS BEERS was designed to benchmark RNA-Seq alignment algorithms...2998 days ago
String graph based genome assembly software and tools !
...d favourably with those of existing leading assemblers. 3. FSG: Fast String Graph The new integrated assembler has been assessed on a standard benchmark, showing that fast string gra...2352 days ago
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):184, 2013. http://bmi.osu.edu/hpc/software/benchmark/ http://bmi.osu.edu/hpc/soft...3920 days ago
Bioinformatics tools and software
...acterial genomes. QSCORE >Compare two multiple alignments for benchmarking. PALS >Whole-genom...nment. PREFAB >Protein Reference Alignment Database. MSA benchmark collection >Selected multi...2884 days ago
Awesome perl frameworks, libraries and software - PART 2
...-perl DNS resolver with support for timeout japhb/perl6-bench - Benchmark and compare Perl 6 implementa...f Perl Amazon EC2 modules that supports the tag API kappa/perl-httpd-benchmarks - Searching for fastest...2518 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...tten by Laurent Excoffier, John Novembre, and Stefan Schneider. http://www.stanford.edu/group/hadlylab/ssc/index.htmlBEERS BEERS was designed to benchmark RNA-Seq alignment algorithms...3761 days ago
Genome Assembly Tools and Software - PART1 !!
...NanoMark – DNA Assembly Benchmark for Nanopore long reads DNA Assembly Benchmark for Nanopore long readsA syst...enome assemblies. The algorithm and benchmarks are described in the Ge...leteness assessment employs sets of Benchmarking Universal Single-Copy Orth...2709 days ago
BINC Exam merged with DBT- BET JRF Exam
...ng Programme (BITP). While this comes as a surprise for a lot of participants. We believe this is a good attempt to unify and create a national benchmark for talent. And we appreciate...1923 days ago
ArrayGen Bioinformatics Genomics Group
...ing research processes. ArrayGen specializes in Genomics data analysis and research, as we believe in the level of precision, predictability, benchmark-ability, and data analysis ca...3530 days ago
Comment on "Benchmarking Perl Module !"
...is can be done using the Perl Benchmark module, which provides a simp...de. Here is a quick guide to benchmarking a Perl module using the Be...enchmark code: Write a simple benchmark program that exercises the fu...to run and a reference to the benchmark subroutine. Here's an example...439 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...calls and regions for use in benchmarking and validating variant calling pipelines. Currently, benchmark VCF and BED files for small v...2 on GRCh37 and GRCh38 Benchmarking best practices:To establis...sp;is focused on establishing benchmark large indel and structural va...1583 days ago