2561 days ago
String graph based genome assembly software and tools !
...sequences of reads sharing the seeds. Such consensus sequences are then extended to contigs. BASE is a...ant improvement in quality for long NGS reads. It is relatively easy to extend BASE to include scaffolding....2359 days ago
3456 days ago
YASS :: genomic similarity search tool
...for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses seeds to detect potential similarity regions, and then tries to extend them to local alignments. Thi...2955 days ago
Genome Assembly Tools and Software - PART2 !!
...d ReferencesAlignGraph is a software that extends and joins contigs or scaffol...reads into new contigs; reference contigs are extended or merged; iterating the wh...“primer” therefore help to “extend” the length of the orig...2716 days ago
Commercial and public next-gen-seq (NGS) software
...llumina, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench so...eased as a package providing an efficient suffix tree library, seed-and-extend alignment, SNP detection, rep...3549 days ago
Software packages for next gen sequence analysis
...llumina, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench so...eased as a package providing an efficient suffix tree library, seed-and-extend alignment, SNP detection, rep...3273 days ago
Protein function annotation and machine learning - UPMC - Paris, France
...ready demonstrated in a previous work that the problem of functional annotation is inherent to the ability of uncovering such paths. Now, we shall extend this approach to large scale...3595 days ago
Wellcome Trust/DBT India Alliance Margdarshi Fellowships 2016
...independent investigator, and can be of any age or nationality Have Sponsor(s) at not-for-profit Host Institution(s) in India, who is willing to extend the desired commitment and re...2989 days ago
Installing Porechop on Ubuntu !
...me SCORING_SCHEME Comma-delimited string of alignment scores: match, mismatch, gap open, gap extend (default: 3,-6,-5,-2) End...2136 days ago
Tadpole is 250x faster than SPADes assembler !
...: tadpole.sh in= out= mode=extend Correction: tadpole.sh in=...bA_r2.fq,null mode=correct Extending contigs with reads could b...or begin extension. mincountextend=2 (mce) Minimum kmer count...rs: extendleft=100 (el) Extend to the left by at most this m...1006 days ago
1551 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...n penalty for SW-alignment(end2end-global: insertion, deletion, one-end-extend: insertion, deletion). [5(,5,...n penalty for SW-alignment(end2end-global: insertion, deletion, one-end-extend: insertion, deletion). [2(,2,...2153 days ago