Results for "Mate"
Users
Interests: NanomaterialsInterests: Polymeric scaffold based optoelectronic materials3475 days ago
Blogs
String graph based genome assembly software and tools !
...d reads. The third phase uses paired end and/or mate pair data to build scaffolds...on of read copy counts, and the improved use of mate pairs and min-cost flow for s...ten collapsed by other assemblers. Its ultimate goal is to find a minimal set...2379 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
...Biology. 7:1-52. 2. Trivers, R. L. 1974 Parent-offspring conflict. American Zoologist. 14(1):249-264. Sexual Selection 1. Zahavi, A. 1975. Mate selection - a selection of a...728 days ago
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Bookmarks
- ...of an assembly in a reference-independent manner using rigorous statistical methods. This framework is comprehensive, and integrates read quality, mate pair orientation and insert l...
2982 days ago
- ...omatic application for genome scaffolding of pre-assembled contigs using mate-pair data. It also produces e...configuration file that notably specifies the average insert size of the mate-pair library preprocess allow...
2904 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...logenetic tree into account to estimate a possible ordering of the co...hm to assemble transcripts and estimate their expression levels from...e information of paired-end and/or matepair data, SSPACE is able to a...rs to clean sequence data from automated DNA sequencers prior to sequ...2736 days ago
Top-level pages
- ...probability that your sample contains a homozygous mutation of G to A. mate-pair: in paired-end sequencin...ends which are sequenced form a pair, and are frequently referred to as mate-pairs. QNAME: unique identif...
2920 days ago
Genome Assembly Tools and Software - PART1 !!
...ems in functional genomics. Rnnotator is an automated software pipeline that gener...om metagenomic data FGAP 1.8.1 – Automated Gap Closing tool FGAP aim...ed with several special algorithms.MAP uses the mate pair information, resulting i...2736 days ago
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Wire posts
Bio-Scripts
- ..."chr1" or "1"). "from" and "to" are 1-based coordinates --matepair-distance Filter by distance between matepairs....
2177 days ago
- ...mented copy-ratio and minor-allele-fraction estimates PostprocessGermlineCNVC...etrics (Picard) (BETA Tool) (Experimental) Estimates the rate of independent repl...ile by applying one of several filters. FixMateInformation (Picard)...
2126 days ago
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Comments
Comment on "RACA: Reference-Assisted Chromosome Assembly"
...hromosomes from genome contigs or scaffolds using their alignments to a reference genome of a closely related species. Chromosomer does not require mate-pair libraries and it offers...2822 days ago
- ...termined according to paired-end (mate-pair) data and constructs sca...---------- Map paired-end (mate-pair) reads on contigs, deter...see "***** NOTE ***** Paired-end (Mate-pair) input" below O...Outward-pair data (often called "Mate-pair", accepted in options "-...
2850 days ago
