Results for "sample"
Bio-Scripts
P2922 days ago
- ...strict; #use warnings; #Author: Santhilal Subhash #Contact: santhilal.subhash@gu.se #RPKM for RNAseq V1.3 #USAGE for sample input provided: perl rpkm_script_beta.pl sample_count_test.count 2:9 15 > sam...
2922 days ago
- ...umn from a t distribution #Created and updated by Santhilal Subhash on 2016/06/07 CI_normal 1) { for(i in 1:length(colnames(li))) { sample...
2922 days ago
- bio
2520 days ago
Genetic Algorithms demonstration with word DNA in Perl
...ach my $slot (1..$pop_size) { my $index = sample(\@weights); # we pass a r...on $index die "Undefined index returned by sample(), probably all indiv...ness; } # end of fitness() } # Function to sample from an array of weighted ele...2422 days ago
- # list sample names & download URLs. sample_links = {"ERR458493": "https://osf.io/5daup/...": "https://osf.io/qfsze/download"} # the sample names are dictionary keys in...ks. extract them to a list we can use below SAMPLES=sample_links.keys() # dow...
1567 days ago
- ...seline contig ploidy for germline samples given counts data Germl...copy-number variants in germline samples given their counts and the o...ccumulate flag statistics GetSampleName...ance between genotype data of one samples in each of two VCFs - one b...
2126 days ago
- ...missing-declarations -DNUPACK_SAMPLE -I../../../src/shared -I../....missing-declarations -DNUPACK_SAMPLE -I../../../src/shared -I../....missing-declarations -DNUPACK_SAMPLE -I../../../src/shared -I../....~~~~~~~~~~~~~~~~ cc -DNUPACK_SAMPLE -std=c99 -O3 -Wall -Wmissing...
2077 days ago
Finding Kmers from fasta sequence file
Save it in sample.fa >test TAATGCCATGGGATGTT jellyfish count -m 3 -s 100000 sample.fa -o sample.jf jellyfish dump -c sample.jf It return TGT 1 GAT 1 GGG 1 GGA 1 CAT 1 TGC 1 TAA 1 GCC 1 CCA 1 GTT 1 TGG 1 ATG 3 AAT 12023 days ago
Bash script to alignment of short reads against reference genome !
...bwa: bwa mem -t $threads -R '@RG\tID:K12\tSM:K12' --- this says "align using so many threads" and also "give the reads the read group K12 and the sample name K12" #reference and FAS...1610 days ago
