Results for "scores"
Bio-Scripts
Needleman-Wunsch Algorithm in Perl
...matrix and gapcost from command line my ($seq1, $seq2, $smfile, $gapcost) = @ARGV; # scoring scheme (instead of using fixed MATCH and MISMATCH scores we will use values read from...2955 days ago
Installing Porechop on Ubuntu !
...sent (default: 10000) --scoring_scheme SCORING_SCHEME Comma-delimited string of alignment scores: match,...2155 days ago
- ...ScoreDistribution (Picard) Chart the distribution of quality scores. QualityScoreDistribut...ltering, microbe reference alignment, and abundance scoring PathSeqScoreSpark...
2124 days ago
Tadpole is 250x faster than SPADes assembler !
...o=t (markerrorreadsonly) Only mark bad bases in reads containing errors. markquality=0 (mq) Set quality scores for marked bases to this....1025 days ago
Perl script for Smith-Waterman Algorithm
# Smith-Waterman Algorithm # usage statement die "usage: $0 \n" unless @ARGV == 2; # get sequences from command line my ($seq1, $seq2) = @ARGV; # scoring s...999 days ago
Python script to parse a FASTQ file !
#Python script to parse a FASTQ file and extract basic information such as the sequence identifier, sequence, and quality scores #pip install biopython from Bio import SeqIO de...13 days ago
