Installing pb-assembly on Linux !
...LLVM/3.8.1-foss-2016b boost/1.55.0/gcc/4.7.3...modules cURL/7.55.1-GCCcore-6.4.0...libcurl: 7.61.1-hbdb9355_2 conda-forge libd...7.61.1 hbdb9355_2 conda-forge libdeflate...2062 days ago
2054 days ago
Installing Platypus on Ubuntu !
...c -o tabix tabix.o libhts.a -lz -lm -lbz2 -llzma -lpthread mkdir -p -m 755 /usr/local/bin /usr/local/inc...it:(master) ✗ sudo make install [sudo] password for urbe: mkdir -p -m 755 /usr/local/bin /usr/local/inc...2047 days ago
Setting up falconUnzip conda environments for genome assembly !
...zler-0.0.0 | h470a237_0 755 KB bioconda cryptograph...forge libcurl: 7.62.0-hbdb9355_0 conda-forge l...############### | 100% pb-dazzler-0.0.0 | 755 KB | #####################...2017 days ago
Palindrome Simulation commands !
...t153CH101.fasta id=97 3316 mutate.sh in=mutant15CH101.fasta out=mutant153CH101.fasta id=97 3317 history > allCommands 3318 cat ch101_read33155_template_pass_FAH31515.faa mu...1763 days ago
Bash script to alignment of short reads against reference genome !
...0 -R '@RG\tID:K12\tSM:K12' \ E.coli_K12_MG1655.fa SRR1770413_1.fastq.gz SRR1...name K12" #reference and FASTQs E.coli_K12_MG1655.fa SRR1770413_1.fastq.gz SRR1...G\tID:O104_H4\tSM:O104_H4' \ E.coli_K12_MG1655.fa SRR341549_1.fastq.gz SRR3...1587 days ago
Bash commandline to install Anaconda !
..._0 ... installing: icu-58.2-h9c2bf20_1 ... installing: jbig-2.1-hdba287a_0 ... installing: jpeg-9b-h024ee3a_2 ... installing: libffi-3.2.1-hd88cf55_4 ... installing: liblief-0....1583 days ago
Bash command to install Miniconda !
...py37_0 - libedit==3.1.20181209=hc058e9b_0 - libffi==3.2.1=hd88cf55_4 - libgcc-ng==9.1.0=hdf...9-hc058e9b_0 libffi pkgs/main/linux-64::libffi-3.2.1-hd88cf55_4 libgcc-ng pkgs/...1583 days ago
Bash command to install bwa, samtools, picard !
...| habb00fd_1 73.2 MB gcc_linux-64-7.3.0 | h553295d_15 25 KB g...| hdf63c60_1 9.0 MB gfortran_linux-64-7.3.0 | h553295d_15 25 KB g...1583 days ago
Bash command to install GATK, Bedtools and SnpEff !
...163 KB r-digest-0.6.18 | r36h96ca727_0 155 KB r-fansi-0.4.0...######################################## | 100% r-digest-0.6.18 | 155 KB | #####################...1583 days ago